Bacterial pathogens and indicators, viruses, and parasites in various food commodities - April 1, 2020, to March 31, 2024

Food microbiology - Targeted surveys - Interim report

Summary

From April 1, 2020, to March 31, 2024, a total of 29,297 food samples were tested in a suite of ongoing targeted surveysFootnote 1 to investigate the presence of bacterial pathogens and indicators, viruses, and parasites.

Of the samples tested, 99.34% were satisfactory, 0.55% were investigative and 0.11% were unsatisfactory. The Canadian Food Inspection Agency (CFIA) conducted appropriate follow-up activities including the oversight of industry led voluntary food recalls.

Final reports, which will include a detailed analysis of the results, will be published over the next few years as the surveys are completed.

What an interim report is

An interim report provides preliminary results related to on-going targeted surveysFootnote 1 which can vary in duration from several months to several years depending on the objective of each survey.

Will final reports be published

Yes, upon conclusion of the surveys, final reports or scientific publications will be published.

What foods were tested

The presence of bacterial pathogens and indicators, viruses, and parasites was investigated in a variety of foods of the following commodities:

  • raw dairy milk cheese
  • fresh and frozen fruits and vegetables
  • oysters
  • baby food
  • tahini
  • raw shelled nuts
  • kimchi
  • cream-filled pastries
  • poppy seeds

Why these foods were tested

The selected foods are all commonly consumed by Canadians of all agesFootnote 2. Unfortunately, most of these commodities have been associated with recalls and outbreaks of foodborne illnesses. Contamination with pathogens can occur at any step in the food supply chain such as during production, processing, packaging, distribution, and/or at retail. Given that most of the commodities covered by this report are consumed without further preparation, the presence of pathogens creates the potential for foodborne illness.

When the samples were collected

The samples were collected from April 1, 2020, to March 31, 2024. This report covers a period of 4 fiscal years (2020 to 2021, 2021 to 2022, 2022 to 2023 and 2023 to 2024) with a fiscal year being a 12-month period from April 1 to March 31 of the following year.

Where the samples were collected from

Samples were collected from national retail chains and local/regional grocery stores located in 11 major cities across Canada:

  • Halifax
  • Moncton
  • Quebec City
  • Montreal
  • Toronto
  • Ottawa
  • Vancouver
  • Victoria
  • Calgary
  • Saskatoon
  • Winnipeg

A sample consisted of a single or multiple consumer-size packages from the same lot weighing at least 250g. The planned number of samples to be collected from each city was based on the population of the province in which the city was located relative to the total population of Canada.

Methods used to test the samples

Samples were analyzed using analytical methods published in Health Canada's Compendium of Analytical Methods for the Microbiological Analysis of FoodsFootnote 3, CFIA internally developed methods, methods from other organizations such as ISO or FDA BAM, and methods that detect the presence of deoxyribonucleic acid (DNA) of Cyclospora and Giardia.

How the samples were assessed

The samples were assessed using criteria (tables 1, 2, 3) based on the principles of the following Health Canada documents: Health Products and Food Branch (HPFB) Standards and Guidelines for Microbiological Safety of Food – An Interpretive SummaryFootnote 4, Policy on Listeria monocytogenes in Ready-to-Eat FoodsFootnote 5, and the Food and Drugs Act (Section 4 (1))Footnote 6. In the absence of Health Canada standards, policies, or guidelines, the assessment criteria are based on guidelines developed by international food safety authorities. Detailed information about the assessment criteria used for each commodity will be provided in the final reports or scientific publications which will be published after the surveys have concluded.

Table 1 - Assessment criteria for indicator organisms
Analysis Product(s) Satisfactory
assessment
Investigative
assessment
Unsatisfactory
assessment
Aerobic Colony Count (ACC) Frozen corn or peas ≤2.5x105 Colony Forming Units (CFU)/g >2.5x105 CFU/g Not Applicable (N/A)
Generic E. coli Fresh fruits and vegetables Frozen cut fruits
Frozen corn or peas
≤102 CFU/g or Most Probable Number (MPN)/g >102 and ≤103 CFU/g or MPN/g >103 CFU/g or MPN/g
Generic E. coli Raw shelled nuts ≤102 MPN/g >102 MPN/g N/A
Generic E. coli Raw milk cheese ≤5x102 CFU/g or MPN/g >5x102 and ≤2x103 CFU/g or MPN/g >2x103 CFU/g or MPN/g
Generic E. coli Frozen RTE cream-filled pastries ≤1.8 MPN/g >1.8 and ≤103 MPN/g >103 MPN/g
Table 2 - Assessment criteria for pathogenic bacteria
Analysis Product(s) Satisfactory
assessment
Investigative
assessment
Unsatisfactory
assessment
E. coli O157 All products tested for E. coli O157 Not detected/25 g N/A Detected/25 g
Non-O157 Shiga Toxin-Producing E. coli (STEC) All products tested for non-O157 STEC Not detected/25 g Detected/25 g N/A
Listeria monocytogenes (L. monocytogenes) Category 1 products Table Note a Not detected/25 g N/A Detected/25 g
L. monocytogenes Category 2A and 2B products Table Note a Not detected/25 g  ≤102 CFU/g >102 CFU/g
L. monocytogenes Whole fruits Not detected/25 g Detected/25 g (enumeration is required) N/A
Salmonella species (spp.) All products tested for Salmonella spp. Not detected/25 g N/A Detected/25 g
Staphylococcus aureus (S. aureus) Raw milk cheese ≤103 CFU/g >103 and ≤ 104 CFU/g >104 CFU/g
S. aureus Frozen RTE cream-filled pastries ≤102 CFU/g >102 and ≤ 104 CFU/g >104 CFU/g
Commercial sterility Baby foods in retort pouches Pass N/A Fail
Table 3 - Assessment criteria for viruses and parasites
Analysis Product(s) Satisfactory
assessment
Investigative
assessment
Unsatisfactory
assessment
Cyclospora Table Note a
Giardia Table Note a
Hepatitis A Virus (HAV) Table Note a
Norovirus Genotype (I and II) (NoV (GI and GII)) Table Note a
All products tested for parasites or viruses Not detected Detected N/A

Preliminary survey results

Details about each targeted survey and test results (as of March 31, 2024) can be found in table 4.

Table 4 - Survey results as of March 31, 2024
Fiscal year(s) Product
(sample plan ID)
Microorganisms tested Number of samples tested Satisfactory (S) Investigative (I) Unsatisfactory (U) Comments
2020/2021
2021/2022
2022/2023
2023/2024
Imported raw dairy milk cheese
(SB3015)
L. monocytogenes Salmonella spp.
E. coli O157
S. aureus
Generic E. coli
1348 1348 0 0 All satisfactory
2021/2022
2022/2023
2023/2024
Domestic raw dairy milk cheese
(SB3098)
L. monocytogenes Salmonella spp.
E. coli O157
S. aureus
Generic E. coli
923 922 0 1 U= L. monocytogenes
2021/2022
2022/2023
2023/2024
Non-cow raw milk cheese
(SB3097)
L. monocytogenes Salmonella spp.
S. aureus
Generic E. coli
877 875 1 1 I= L. monocytogenes U=Generic E. coli
2020/2021 Domestic fresh-cut RTE prepackaged vegetable salads
(F242R)
L. monocytogenes Salmonella spp.
E. coli O157
Generic E. coli
15 15 0 0 All satisfactory
2020/2021 Imported fresh-cut RTE prepackaged vegetable salads
(F247R)
L. monocytogenes Salmonella spp.
E. coli O157
Generic E. coli
193 193 0 0 All satisfactory
2021/2022
2022/2023
2023/2024
Fresh-cut RTE prepackaged leafy vegetable- based salads with dressing kits
(SB3209)
L. monocytogenes Salmonella spp.
E. coli O157
Generic E. coli
1283 1277 0 6 U=L. monocytogenes (4)
U=Salmonella spp. (2)
2021/2022
2022/2023
2023/2024
Fresh-cut RTE prepackaged leafy vegetable-based salads without dressing kits
(SB3210)
L. monocytogenes Salmonella spp.
E. coli O157
Generic E. coli
1205 1200 0 5 U=L. monocytogenes (5)
2020/2021
2021/2022
2022/2023
2023/2024
Imported fresh-cut leafy vegetable-based salads
(F263R &SB3222)
Cyclospora
Giardia
1152 1148 4 N/A I=Cyclospora (2)
I=Giardia (2)
2021/2022
2022/2023
2023/2024
Imported fresh-cut leafy vegetable-based salads
(SB3217)
HAV
NoV (GI, GII)
860 859 1 N/A I= Nov (GII)
2021/2022
2022/2023
2023/2024
Domestic fresh-cut leafy vegetable-based salads
(SB3218)
HAV
NoV (GI, GII)
330 329 1 N/A I= Nov (GII)
2020/2021
2021/2022
2022/2023
2023/2024
Domestic whole leafy vegetables
(SB3092)
Salmonella spp.(2021-2024 only)
E. coli O157
STEC
Generic E. coli
599 596 3 0 I=STEC (1)
I=Generic E. coli (2)
2021/2022
2022/2023
2023/2024
Domestic whole leafy vegetables
(SB3102)
Salmonella spp.
E. coli O157
Generic E. coli
576 572 4 0 I=Generic E. coli (4)
2020/2021
2021/2022
2022/2023
2023/2024
Imported whole leafy vegetables
(SB3093)
Salmonella spp. (2021-2024 only)
E. coli O157
STEC
Generic E. coli
667 665 2 0 I=STEC (2)
2021/2022
2022/2023
2023/2024
Imported whole leafy vegetables
(SB3101)
Salmonella spp.
E. coli O157
Generic E. coli
1468 1466 2 0 I=Generic E. coli (2)
2021/2022
2022/2023
2023/2024
Imported fresh whole leafy vegetables
(SB3221)
Cyclospora
Giardia
541 538 3 N/A I=Cyclospora (2)
I=Giardia (1)
2021/2022
2022/2023
2023/2024
Imported fresh leafy herbs
(SB3103)
Salmonella spp.
E. coli O157
Generic E. coli
1183 1168 9 6 I=Generic E. coli (9)
U=Generic E. coli (6)
2021/2022
2022/2023
2023/2024
Domestic fresh leafy herbs
(SB3104)
Salmonella spp.
E. coli O157
Generic E. coli
572 564 7 1 I=Generic E. coli (7)
U=Generic E. coli (1)
2020/2021 Domestic whole fresh vegetables and herbs
(F258R)
Salmonella spp.
E. coli O157
Generic E. coli
91 91 0 0 All satisfactory
2020/2021 Imported whole fresh vegetables and herbs
(F259R)
Salmonella spp.
E. coli O157
Generic E. coli
196 196 0 0 All satisfactory
2022/2023
2023/2024
Imported fresh leafy herbs (seasonal focus on cilantro) (SB3081) Cyclospora 728 724 4 0 I=Cyclospora (4)
2021/2022
2022/2023
2023/2024
Imported fresh whole vegetables
(SB3105)
Salmonella spp.
E. coli O157
Generic E. coli
1679 1678 1 0 I=Generic E. coli
2021/2022
2022/2023
2023/2024
Domestic fresh whole vegetables
(SB3106)
Salmonella spp.
E. coli O157
Generic E. coli
693 693 0 0 All satisfactory
2022/2023
2023/2024
Fresh whole hot peppers (SB3123) Salmonella spp.
E. coli O157
Generic E. coli
592 582 5 5 I=Generic E. coli (5)
U= Salmonella spp. (2)
U=Generic E. coli (3)
2023/2024 Imported frozen corn or imported frozen peas (SB3126) Salmonella spp.
L. monocytogenes
Generic E. coli
ACC
247 227 19 1 I= L. monocytogenes (7)
I= Generic E. coli (2)
I= ACC (10)
U= Salmonella spp.
2021/2022
2022/2023
2023/2024
Imported green onions
(SB3223)
HAV
NoV (GI, GII)
537 537 0 0 All satisfactory
2021/2022
2022/2023
2023/2024
Domestic green onions
(SB3224)
HAV
NoV (GI, GII)
204 204 0 0 All satisfactory
2021/2022
2022/2023
2023/2024
Fresh-cut fruits
(SB3211)
L. monocytogenes
Salmonella spp.
E. coli O157
Generic E. coli
1238 1237 0 1 U=L. monocytogenes
2021/2022
2022/2023
2023/2024
Frozen cut fruits
(SB3112)
L. monocytogenes
Salmonella spp.
E. coli O157
Generic E. coli
886 886 0 0 All satisfactory
2021/2022
2022/2023
2023/2024
Frozen cut fruits (bulk packaged)
(SB3212)
L. monocytogenes
Salmonella spp.
E. coli O157
Generic E. coli
411 411 0 0 All satisfactory
2020/2021 Domestic fresh whole fruits
(F260R)
Salmonella spp.
E. coli O157
Generic E. coli
81 81 0 0 All satisfactory
2020/2021 Imported fresh whole fruits
(F261R)
Salmonella spp.
E. coli O157
Generic E. coli
194 194 0 0 All satisfactory
2021/2022
2022/2023
2023/2024
Imported fresh whole fruits
(SB3107)
L. monocytogenes
Salmonella spp.
E. coli O157
Generic E. coli
1182 1168 14 0 I=L. monocytogenes (14)
2021/2022
2022/2023
2023/2024
Domestic fresh whole fruits
(SB3108)
L. monocytogenes
Salmonella spp.
E. coli O157
Generic E. coli
591 584 7 0 I=L. monocytogenes (7)
2022/2023
2023/2024
Imported fresh berries (SB341) Cyclospora 755 754 1 0 I=Cyclospora
2021/2022
2022/2023
2023/2024
Imported fresh berries
(SB345)
HAV
NoV (GI, GII)
881 881 0 N/A All satisfactory
2021/2022
2022/2023
2023/2024
Domestic fresh berries
(SB346)
HAV
NoV (GI, GII)
418 418 0 N/A All satisfactory
2021/2022
2022/2023
2023/2024
Domestic oysters
(SB3219)
HAV
NoV (GI, GII)
415 394 21 N/A I=NoV (GI) (3)
I=Nov (GII) (14)
I=NoV (GI and GII) (4)
2021/2022
2022/2023
2023/2024
Imported oysters
(SB3220)
HAV
NoV (GI, GII)
104 52 52 N/A I=NoV (GI) (11)
I=NoV (GII) (13)
I=NoV (GI and GII) (28)
2021/2022
2022/2023
2023/2024
Raw shelled nuts
(SB3119)
Salmonella spp.
E. coli O157
Generic E. coli
1474 1473 0 1 U= Salmonella spp.
2023/2024 Imported dried whole poppy seeds (SB3128) Salmonella spp. 59 59 0 0 All satisfactory
2022/2023
2023/2024
Refrigerated kimchi (SB3125) L. monocytogenes Salmonella spp.
E. coli O157
589 589 0 0 All satisfactory
2020/2021
2021/2022
2022/2023
2023/2024
Imported tahini
(FS358R & SB3099)
Salmonella spp. 543 538 N/A 5 U=Salmonella spp.(5)
2023/2024 RTE frozen cream-filled pastries (SB3127) L. monocytogenes
Salmonella spp.
S. aureus
Generic E. coli
147 147 0 0 All satisfactory
2021/2022
2022/2023
2023/2024
Baby food in retort pouches
(SB3214)
Commercial sterility 570 570 0 0 All satisfactory
Total (%) - - 29,297 29,103 (99.34) 161 (0.55) 33 (0.11) -

What is done with the survey results

All results are used to:

  • inform risk management decisions
  • support program design and re-design

All investigative and unsatisfactory results triggered appropriate follow-up actions such as:

  • on site visit of the manufacturer
  • follow-up with the importer
  • review of hygiene and sanitation procedures
  • review of production and distribution records
  • review of previous laboratory test results
  • additional sampling and testing
  • food recalls

Where to access the survey data

All of the results reported herein are considered preliminary, as the targeted surveys are still ongoing. Therefore, the data will only be accessible to the public on the Open Government portal following the publication of the final report or scientific publication.